Re: [unrev-II] MetaGraph modeling (open-source/Java-based) for Bioinfomatics Collaboration

From: John J. Deneen (jjdeneen@ricochet.net)
Date: Fri Jun 15 2001 - 19:44:22 PDT

  • Next message: John J. Deneen: "[unrev-II] Demo of Universal Library with Hyperbolic Tree Directory"

    Perhaps a better presentation about MetaGraph?
     <
    http://www.ulib.org//webRoot/SlideShows/Intel_CCC_Presentations/Session_A_-_Get_Pyhsical_-_3-15-2000/4_-_Prof_Bob_Franza.PPT
    >

    "John J. Deneen" wrote:

    > Overview presentation
    > < http://24.0.168.201/metagraph/privateSite/MetaGraph-public.ppt >
    >
    > Metagraph is a code name for a data and process representation
    > language
    > used to describe structures and methods that capture, among other
    > things, a computerized abstraction of the scientific process. Metgraph
    >
    > software is being developed to support modeling and implementation of
    > the scientific methods practiced at CSI and CSI's collaborators.
    > Metagraph software also supports model-based laboratory automation and
    >
    > control applications.
    >
    > Object Database System
    > The new object database system being developed by CSI's Cellworks
    > Project represents an entirely different approach to database
    > management
    > system technology. Its primary goal is to provide a dynamic data
    > engine
    > that can handle complex hyper-graph / XML /Metagraph queries directly
    > instead of simply returning a search set report to be parsed,
    > interpreted and then analyzed by client applications. This new data
    > system is highly distributed and entirely Java based. Its unique
    > approach allows it to deal with data objects in their natural state
    > instead of having to require a map or SQL translation layer.
    >
    > MetaGraph is a collaborative effort to produce a framework and set of
    > tools for modeling, storing, and querying biological information.
    > < http://www.csi.washington.edu/comsystec/metagraph/ >
    >
    > The MetaGraph Canon, a hypertext document that describes canonical
    > forms
    > of usage for MetaGraph in biology.
    > < http://24.0.168.201/metagraph/privateSite/Index.html >
    >
    > The MetaGraph DTD for validating XML representations of MetaGraph
    > data.
    > < http://www.metagraph.org/schema/metagraph.txt >
    >
    >
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